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Crystal structure of fungal lectin : six-bladed beta-propeller fold and novel fucose recognition mode for aleuria aurantia lectin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 2UL BUFFER (0.1 M SODIUM CACODYLATE PH 6.5, 0.2M MAGNESIUM ACETATE TETRAHYDRATE, 20% PEG 8000) PLUS 2UL OF LECTIN PROTEIN AT 10 MG/ML AND L-FUCOSE AT 137 UG/ML
Crystal Properties Matthews coefficient Solvent content 2.2 32.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.969 α = 90 b = 86.406 β = 90.62 c = 77.849 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MULTILAYER 2003-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 19.96 96.8 0.049 8.4 3.6 534572 14.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 96.8 0.374 18.4 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.5 19.96 92216 1884 96.8 0.144 0.1726 0.179 0.1987 RANDOM 12.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.096 r_scangle_it 2.956 r_scbond_it 1.954 r_angle_refined_deg 1.54 r_mcangle_it 1.448 r_angle_other_deg 1.439 r_mcbond_it 0.858 r_symmetry_vdw_other 0.289 r_nbd_other 0.277 r_nbd_refined 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.096 r_scangle_it 2.956 r_scbond_it 1.954 r_angle_refined_deg 1.54 r_mcangle_it 1.448 r_angle_other_deg 1.439 r_mcbond_it 0.858 r_symmetry_vdw_other 0.289 r_nbd_other 0.277 r_nbd_refined 0.195 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.155 r_chiral_restr 0.099 r_nbtor_other 0.093 r_bond_other_d 0.016 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4742 Nucleic Acid Atoms Solvent Atoms 1166 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling autoSHARP phasing