1OB4
Cephaibol A
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 4.6 | 0.1 M NAAC/HAC PH=4.6, 34% ETOH, pH 4.60 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.57 | 22 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 30.534 | α = 90 |
b = 37.787 | β = 90 |
c = 9.115 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | BRUKER SMART 6000 | MIRRORS | 2002-02-15 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE | BRUKER M06XCE |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 0.95 | 37.8 | 98.6 | 0.0431 | 29.21 | 9.45 | 7025 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 0.95 | 1.05 | 96.6 | 0.1156 | 10.67 | 4.66 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | DIRECT METHODS | FREE R-VALUE | 0.95 | 37.8 | 7025 | 353 | 98.6 | 0.0872 | 0.0858 | 0.112 | RANDOM |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
Coordinate Error | ||
---|---|---|
Structure Solution Method | Refinement High Resolution | Refinement Low Resolution |
2 | 124 | 133.28 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
s_from_restr_planes | 0.416 |
s_zero_chiral_vol | 0.149 |
s_non_zero_chiral_vol | 0.112 |
s_approx_iso_adps | 0.082 |
s_similar_adp_cmpnt | 0.046 |
s_angle_d | 0.035 |
s_anti_bump_dis_restr | 0.035 |
s_bond_d | 0.017 |
s_similar_dist | 0.015 |
s_rigid_bond_adp_cmpnt | 0.005 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 119 |
Nucleic Acid Atoms | |
Solvent Atoms | 15 |
Heterogen Atoms | 3 |
Software
Software | |
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Software Name | Purpose |
SHELXL-97 | refinement |
SAINT | data reduction |
SADABS | data scaling |
SHELXD | phasing |