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Structure of P. falciparum PfPK5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100MM HEPES SODIUM SALT PH 7.5, 10MM MGCL2, PEG 8K (8-16%), ISOPROPANOL (2-8%)
Crystal Properties Matthews coefficient Solvent content 2.3 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 222.088 α = 90 b = 44.267 β = 103.42 c = 63.044 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2001-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 36.2 99 0.094 1.6 2.6 46965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 97.9 0.414 1.6 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 105.41 44577 2378 98.8 0.193 0.191 0.1966 0.231 0.2337 RANDOM 31.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 0.47 1.4 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.671 r_scangle_it 4.236 r_scbond_it 2.647 r_mcangle_it 2.181 r_angle_refined_deg 1.511 r_mcbond_it 1.298 r_angle_other_deg 0.838 r_symmetry_vdw_other 0.331 r_nbd_other 0.238 r_nbd_refined 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.671 r_scangle_it 4.236 r_scbond_it 2.647 r_mcangle_it 2.181 r_angle_refined_deg 1.511 r_mcbond_it 1.298 r_angle_other_deg 0.838 r_symmetry_vdw_other 0.331 r_nbd_other 0.238 r_nbd_refined 0.218 r_symmetry_hbond_refined 0.207 r_xyhbond_nbd_refined 0.19 r_symmetry_vdw_refined 0.114 r_chiral_restr 0.095 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4309 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing