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ORNITHINE AMINOTRANSFERASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DGD DIALKYLGLYCINE DECARBOXYLASE, PDB ENTRY 1DGD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 pH 7.8
Crystal Properties Matthews coefficient Solvent content 2.78 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.3 α = 90 b = 116.3 β = 90 c = 190 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE AREA DETECTOR MARRESEARCH 1993-10-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.9 0.082 5.4 52220
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT AND NON-CRYSTALLOGRAPHIC AVERAGING THROUGHOUT DIALKYLGLYCINE DECARBOXYLASE, PDB ENTRY 1DGD 2.5 38 2 49620 95.3 0.185 0.185 0.1921 0.235 RANDOM 19.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.7 x_scangle_it 8 x_mcangle_it 6.4 x_scbond_it 5.4 x_mcbond_it 4.2 x_improper_angle_d 1.8 x_angle_deg 1.7 x_bond_d 0.014 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 24.7 x_scangle_it 8 x_mcangle_it 6.4 x_scbond_it 5.4 x_mcbond_it 4.2 x_improper_angle_d 1.8 x_angle_deg 1.7 x_bond_d 0.014 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9483 Nucleic Acid Atoms Solvent Atoms 426 Heterogen Atoms 45
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement MARXDS data reduction CCP4 data scaling X-PLOR phasing