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Crystal structure of the apo form of a PLP-dependent enzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop vapor diffusion 7.5 285 pH 7.5, hanging drop vapor diffusion, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.88 57.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.189 α = 90 b = 152.189 β = 90 c = 77.119 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 98.3 0.064 9.7 2.5 58421 58421
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 98.3 0.266 3.3 2
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.1 49.82 58421 5950 0.224 0.2057 0.255 0.2339 27.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.569 -0.284 -0.569 0.853
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 2.494 p_mcangle_it 1.762 p_scbond_it 1.694 p_angle_d 1.413 p_planar_tor 1.399 p_mcbond_it 1.012 p_chiral_restr 0.102 p_bond_d 0.006 p_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5860 Nucleic Acid Atoms Solvent Atoms 412 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling TRUNCATE data scaling