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Crystal structure of a cbs domain-containing protein (tm0935) from thermotoga maritima at 1.87 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6 277 crystal 1: 20% PEG-6000, 0.1M MES pH 6.0, 1M LiCl, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K 2 VAPOR DIFFUSION,SITTING DROP,NANODROP 6.6 277 crystal 2: 0.2M ammonium formate, 20% PEG-3350, pH 6.6, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.169 α = 90 b = 45.169 β = 90 c = 177.196 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2001-06-03 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2002-12-12 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97932, 0.90497 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.83 31.63 99 0.072 10.5 3.2 16963 16963 32.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.83 1.88 90.6 0.62 1.7 3.1 1130
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.87 31.43 15161 813 99.41 0.19435 0.19113 0.2013 0.25495 0.2612 RANDOM 32.331
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.17 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.217 r_dihedral_angle_3_deg 13.825 r_dihedral_angle_4_deg 8.069 r_dihedral_angle_1_deg 5.331 r_scangle_it 3.409 r_scbond_it 2.123 r_angle_refined_deg 1.549 r_mcangle_it 1.372 r_angle_other_deg 0.882 r_mcbond_it 0.799
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.217 r_dihedral_angle_3_deg 13.825 r_dihedral_angle_4_deg 8.069 r_dihedral_angle_1_deg 5.331 r_scangle_it 3.409 r_scbond_it 2.123 r_angle_refined_deg 1.549 r_mcangle_it 1.372 r_angle_other_deg 0.882 r_mcbond_it 0.799 r_symmetry_vdw_other 0.253 r_nbd_other 0.233 r_xyhbond_nbd_refined 0.222 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.115 r_symmetry_vdw_refined 0.106 r_chiral_restr 0.1 r_nbtor_other 0.085 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1124 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE model building REFMAC refinement CCP4 data scaling RESOLVE phasing