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Crystal structure of staurosporine bound to MAP KAP kinase 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 296 2M ammonium sulfate, 100 mM HEPES pH 7.5, 2% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.67 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.202 α = 90 b = 160.202 β = 90 c = 133.481 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Double crystal Si(111) 2002-06-15 M SINGLE WAVELENGTH 2 1 x-ray 100 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.1 ALS 5.0.2 2 SYNCHROTRON ALS BEAMLINE 5.0.2 0.95666, 0.97926, 0.97955 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.7 50 98.1 0.047 20.2 4.1 53383 52352
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.7 2.8 84.1 0.481 1.6 3.01 4467
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 20 2 52185 49551 2634 98.05 0.24079 0.23872 0.23898 0.27442 RANDOM 29.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.13 1.07 2.13 -3.2
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.188 r_scbond_it 4.622 r_dihedral_angle_1_deg 2.73 r_mcangle_it 2.597 r_angle_refined_deg 2.36 r_mcbond_it 1.337 r_symmetry_vdw_refined 0.306 r_nbd_refined 0.3 r_symmetry_hbond_refined 0.295 r_xyhbond_nbd_refined 0.195
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.188 r_scbond_it 4.622 r_dihedral_angle_1_deg 2.73 r_mcangle_it 2.597 r_angle_refined_deg 2.36 r_mcbond_it 1.337 r_symmetry_vdw_refined 0.306 r_nbd_refined 0.3 r_symmetry_hbond_refined 0.295 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.127 r_bond_refined_d 0.018 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9213 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling SHARP phasing