☰ Navigation Tabs
Crystal structure of human cartilage gp39 (HC-gp39) in complex with chitobiose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.1 277 PEG8000, NaCl, Na-citrate buffer, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 5.10
Crystal Properties Matthews coefficient Solvent content 2.74 54.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.22 α = 90 b = 128.22 β = 90 c = 109.235 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 39.55 96 0.087 11.4 3.1 48088 56.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 92.8 0.48 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 39.55 47647 6882 97.8 0.209 0.209 0.2008 0.252 0.2437 RANDOM 49.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.72 9.72 -19.44
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.9 c_scangle_it 2.69 c_mcangle_it 2.19 c_scbond_it 1.7 c_angle_deg 1.3 c_mcbond_it 1.26 c_improper_angle_d 0.77 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.9 c_scangle_it 2.69 c_mcangle_it 2.19 c_scbond_it 1.7 c_angle_deg 1.3 c_mcbond_it 1.26 c_improper_angle_d 0.77 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11362 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 228
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing