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Deletion Mutant (Delta 141) of Molybdopterin Synthase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FM0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 15% PEG 4000, 10% Isopropanol and 0.1 M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.6 52.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.128 α = 90 b = 127.832 β = 90 c = 138.118 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Mirrors 2002-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 47.14 92.7 0.063 0.063 17.9 3.3 47232 47232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 73.1 0.367 0.367 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FM0 2.15 47.14 47231 44837 2394 93.75 0.17901 0.17901 0.17654 0.1797 0.22704 0.2254 RANDOM 27.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.08 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.256 r_scangle_it 3.242 r_scbond_it 1.897 r_mcangle_it 1.366 r_angle_refined_deg 1.353 r_angle_other_deg 0.83 r_mcbond_it 0.727 r_symmetry_vdw_refined 0.449 r_symmetry_vdw_other 0.295 r_nbd_other 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.256 r_scangle_it 3.242 r_scbond_it 1.897 r_mcangle_it 1.366 r_angle_refined_deg 1.353 r_angle_other_deg 0.83 r_mcbond_it 0.727 r_symmetry_vdw_refined 0.449 r_symmetry_vdw_other 0.295 r_nbd_other 0.243 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.193 r_chiral_restr 0.085 r_nbtor_other 0.084 r_metal_ion_refined 0.032 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5903 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing ARP/wARP model building