☰ Navigation Tabs
Crystal Structure of Mitochondrial Cytochrome bc1 Complex Bound with Ubiquinone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.2 277 PEG 4000, ammonium acetate, potassium chloride, glycerol, DMG/SPC, MOPS, pH 7.2, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.69 66.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.828 α = 90 b = 153.828 β = 90 c = 596.671 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Si(111) M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 1.0 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 95.2 109744 104476 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.602 2.669 96.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.6 28.99 104476 102423 2075 100 0.2473 0.2473 0.24655 0.28316 RANDOM 39.826
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 1.11 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.589 r_scangle_it 8.435 r_scbond_it 6.249 r_dihedral_angle_1_deg 3.066 r_mcangle_it 2.868 r_angle_refined_deg 1.859 r_mcbond_it 0.667 r_chiral_restr 0.321 r_symmetry_hbond_refined 0.246 r_nbd_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.589 r_scangle_it 8.435 r_scbond_it 6.249 r_dihedral_angle_1_deg 3.066 r_mcangle_it 2.868 r_angle_refined_deg 1.859 r_mcbond_it 0.667 r_chiral_restr 0.321 r_symmetry_hbond_refined 0.246 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.189 r_symmetry_vdw_refined 0.18 r_bond_refined_d 0.021 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16510 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 179
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling