X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1CP3 

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.1943.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.488α = 90
b = 83.598β = 90
c = 95.6γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV1999-05-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.62095.90.04315.43709837098

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1CP31.6203555835558362396.060.17580.175530.172190.20528RANDOM18.819
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.42-0.11-0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.948
r_dihedral_angle_1_deg5.96
r_scangle_it4.842
r_mcangle_it3.385
r_scbond_it3.187
r_mcbond_it2.202
r_angle_refined_deg1.24
r_nbd_refined0.21
r_symmetry_vdw_refined0.178
r_symmetry_hbond_refined0.128
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.948
r_dihedral_angle_1_deg5.96
r_scangle_it4.842
r_mcangle_it3.385
r_scbond_it3.187
r_mcbond_it2.202
r_angle_refined_deg1.24
r_nbd_refined0.21
r_symmetry_vdw_refined0.178
r_symmetry_hbond_refined0.128
r_xyhbond_nbd_refined0.126
r_chiral_restr0.094
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1929
Nucleic Acid Atoms
Solvent Atoms303
Heterogen Atoms30

Software

Software
Software NamePurpose
d*TREKdata scaling
d*TREKdata reduction
AMoREphasing
REFMACrefinement