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Crystal Structure of the Antagonist Form of Glucocorticoid Receptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 288 PEG 8000, 1, 6-hexanediol, NaSCN, Tris-HCl, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.7 54.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.859 α = 90 b = 109.764 β = 90 c = 39.261 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 39.26 99.1 0.045 0.035 8.8 3.5 14833 14815 35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 99.1 0.141 0.121 6.1 3.7 2064
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 62.02 14815 14072 743 98.67 0.20787 0.20787 0.2044 0.2207 0.27585 0.2776 RANDOM 16.433
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 2.84 -2.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.083 r_scangle_it 4.04 r_scbond_it 2.501 r_angle_other_deg 2.363 r_angle_refined_deg 1.797 r_mcangle_it 1.538 r_mcbond_it 0.797 r_symmetry_hbond_refined 0.269 r_symmetry_vdw_refined 0.268 r_symmetry_vdw_other 0.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.083 r_scangle_it 4.04 r_scbond_it 2.501 r_angle_other_deg 2.363 r_angle_refined_deg 1.797 r_mcangle_it 1.538 r_mcbond_it 0.797 r_symmetry_hbond_refined 0.269 r_symmetry_vdw_refined 0.268 r_symmetry_vdw_other 0.234 r_nbd_other 0.232 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.187 r_chiral_restr 0.11 r_nbtor_other 0.105 r_bond_refined_d 0.018 r_gen_planes_other 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1952 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 56
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling