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CRYSTAL STRUCTURE OF THE PDZ TANDEM OF HUMAN SYNTENIN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 294 sodium acetate, PEG4000, ammonium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.07 40.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.727 α = 90 b = 48.678 β = 120.82 c = 74.69 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-10-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 0.97946, 0.97133, 0.97900 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 30 99.4 0.073 21.29 11 23111 -3 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.01 94.8 0.342 5.8 2170
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.94 30 21926 1182 99.7 0.18641 0.18424 0.1922 0.2268 0.2269 RANDOM 21.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.58 0.62 0.05 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.542 r_scangle_it 7.528 r_scbond_it 5.018 r_mcangle_it 3.06 r_mcbond_it 1.902 r_angle_refined_deg 1.803 r_angle_other_deg 0.874 r_symmetry_vdw_other 0.328 r_symmetry_hbond_refined 0.3 r_nbd_other 0.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.542 r_scangle_it 7.528 r_scbond_it 5.018 r_mcangle_it 3.06 r_mcbond_it 1.902 r_angle_refined_deg 1.803 r_angle_other_deg 0.874 r_symmetry_vdw_other 0.328 r_symmetry_hbond_refined 0.3 r_nbd_other 0.267 r_nbd_refined 0.247 r_xyhbond_nbd_refined 0.212 r_symmetry_vdw_refined 0.134 r_chiral_restr 0.127 r_nbtor_other 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2454 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection TRUNCATE data reduction SHARP phasing REFMAC refinement HKL-2000 data reduction CCP4 data scaling