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RIP-phasing on Bovine Trypsin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 25% polyethylene glycol (PEG) 8000, 0.2 M ammonium sulphate, 0.1 M Tris buffer, pH 8, and 100 mM benzylamine, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.18 43.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.241 α = 90 b = 56.752 β = 90 c = 66.204 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9763 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 42 99.83 0.05 11.2 13.1 41043 40971 -3 12.31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.47 97.4 0.312 2.7 11.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIP - Radiation-Damage Induced Phasing THROUGHOUT 1.4 42 40971 40971 2061 99.83 0.142 0.142 0.14051 0.17021 RANDOM 14.552
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.02 0.08
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 7.18 r_dihedral_angle_1_deg 6.285 r_scangle_it 4.876 r_scbond_it 3.656 r_mcangle_it 2.799 r_sphericity_free 1.774 r_mcbond_it 1.758 r_angle_refined_deg 1.633 r_rigid_bond_restr 1.419 r_nbd_refined 0.199
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 7.18 r_dihedral_angle_1_deg 6.285 r_scangle_it 4.876 r_scbond_it 3.656 r_mcangle_it 2.799 r_sphericity_free 1.774 r_mcbond_it 1.758 r_angle_refined_deg 1.633 r_rigid_bond_restr 1.419 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.179 r_symmetry_hbond_refined 0.156 r_chiral_restr 0.125 r_xyhbond_nbd_refined 0.125 r_bond_refined_d 0.017 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 25
Software Software Software Name Purpose ProDC data collection SCALA data scaling SHELXD phasing SHARP phasing REFMAC refinement CCP4 data scaling