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ATOMIC RESOLUTION STRUCTURE OF CHOLESTEROL OXIDASE @pH 5.8 (STREPTOMYCES SP. SA-COO)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MXT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 PEG 8000, MANGANESE SULFATE, CACODYLATE, pH 5.8
Crystal Properties Matthews coefficient Solvent content 1.72 41.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.354 α = 90 b = 73.291 β = 105.1 c = 63.171 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1999-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 46.9 95 0.069 7.2 4.1 230865
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.02 90.8 0.656 1.7 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R 1MXT 1 46.9 230858 230858 11553 95 0.1196 0.1189 0.1468 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 105 3742.94 4435.02
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.101 s_zero_chiral_vol 0.089 s_approx_iso_adps 0.082 s_anti_bump_dis_restr 0.053 s_similar_adp_cmpnt 0.038 s_from_restr_planes 0.0339 s_angle_d 0.03 s_bond_d 0.015 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3821 Nucleic Acid Atoms Solvent Atoms 739 Heterogen Atoms 59
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX model building SHELXL-97 refinement SHELX phasing