1N37
NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | Respinomycin D, D(AGACGTCT)2, TSP, NaN3, Na-ETDA | D2O | 100mM NaCl 10mM Na2HPO4 | 7 | 1 atm | 298 | |
2 | 2D TOCSY | Respinomycin D, D(AGACGTCT)2, TSP, NaN3, Na-ETDA | D2O | 100mM NaCl 10mM Na2HPO4 | 7 | 1 atm | 298 | |
3 | DQF-COSY | Respinomycin D, D(AGACGTCT)2, TSP, NaN3, Na-ETDA | D2O | 100mM NaCl 10mM Na2HPO4 | 7 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | Sample was subjected to 500ps of restrained molecular dynamics. Using the AMBER94 Force Field | SANDER(AMBER) |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (n/a) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | SANDER(AMBER) | 4.1 | PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN |
2 | refinement | SANDER(AMBER) | 4.1 | PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN |