☰ Navigation Tabs
Crystal structure of Leishmania mexicana Glycerol-3-phosphate dehydrogenase with inhibitor BCP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 NaCitrate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.32 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.421 α = 90 b = 70.421 β = 90 c = 210.908 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD ADSC QUANTUM 4 2002-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 67 99.5 0.11 0.11 5 14.9 18236 18150 43.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 94.5 0.427 0.427 1.6 2.5 2866
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 18.52 18236 18150 983 99.53 0.2072 0.20728 0.20599 0.2056 0.23144 0.2348 RANDOM 41.571
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 1.05 -2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.825 r_scangle_it 2.902 r_scbond_it 1.641 r_angle_refined_deg 1.557 r_mcangle_it 1.146 r_mcbond_it 0.585 r_symmetry_hbond_refined 0.419 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.184 r_xyhbond_nbd_refined 0.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.825 r_scangle_it 2.902 r_scbond_it 1.641 r_angle_refined_deg 1.557 r_mcangle_it 1.146 r_mcbond_it 0.585 r_symmetry_hbond_refined 0.419 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.184 r_xyhbond_nbd_refined 0.104 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2599 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 51
Software Software Software Name Purpose HKL-2000 data collection SCALA data scaling AMoRE phasing REFMAC refinement HKL-2000 data reduction CCP4 data scaling