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Glycerol-3-phosphate cytidylyltransferase complexed with CDP-glycerol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1COZ PDB ENTRY 1COZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 PEG 3350, lithium sulfate, Tris, EDTA, DTT, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.03 38.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.795 α = 88.99 b = 55.929 β = 75.03 c = 63.701 γ = 82.54
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 140 IMAGE PLATE RIGAKU RAXIS IV mirrors 1998-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 99 87.8 0.051 20.6 3 40625 40625
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.87 82.1 0.191 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1COZ 2 15 30174 30174 3031 89.6 0.2463 0.2463 0.2409 0.2412 0.2944 0.2943 RANDOM 12.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.52 1.615 0.764 1.537 -0.254 -0.017
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.21 c_scbond_it 2.143 c_scangle_it 1.467 c_mcangle_it 1.34 c_angle_deg 1.317 c_mcbond_it 0.914 c_improper_angle_d 0.783 c_bond_d 0.0075
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4248 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 135
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building CNS refinement X-PLOR phasing