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Crystal Structure of Ferrochelatase with Cadmium bound at active site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DOZ PDB ENTRY 1DOZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.4 298 PEG2000, magnesium chloride, tris, pH 7.4, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.03 39.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.415 α = 90 b = 49.878 β = 90 c = 118.777 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH 2000-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.02916 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 26.1 97.3 19585 19585 2 7.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.2 96.7 0.258 22104
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DOZ 2 26.11 20135 19585 1918 97.3 0.231 0.231 0.2314 0.273 0.2743 RANDOM 16.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.74 -2.98 8.72
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.5 c_scangle_it 2.8 c_scbond_it 2.03 c_mcangle_it 1.91 c_mcbond_it 1.37 c_angle_deg 1.2 c_improper_angle_d 0.83 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2486 Nucleic Acid Atoms Solvent Atoms 352 Heterogen Atoms 24
Software Software Software Name Purpose MAR345 data collection XDS data reduction CNS refinement XDS data scaling CNS phasing