1MSE

SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES

SOLUTION NMR

NMR Refinement
Method	Details	Software
ENERGY MINIMIZATION	RMSD BOND DISTANCES 0.006 ANGSTROMS RMSD BOND ANGLES 0.857 DEGREES RMSD CHIRAL CENTERS 0.0664 ANGSTROMS NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 1815 NUMBER OF NUCLEIC ACID ATOMS 698 AMBER FORCE FIELD	EMBOSS

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number	25
Conformers Submitted Total Number	1

Additional NMR Experimental Information
Details	THE STRUCTURES OF N- AND C-TERMINI OF THE PEPTIDE CHAIN (MET 89 - PRO 94 AND ASN 186 - VAL 193) WERE DISORDERED AMONG THE 25 STRUCTURES. THE ORIENTATION OF THE LAST 5 BASE PAIRS OF THE DNA IS POORLY DEFINED WITH RESPECT TO THE CORE OF THE COMPLEX. CONSEQUENTLY, ONLY THE COORDINATES OF BASE PAIRS 1 - 11 OF DNA HAVE BEEN DEPOSITED TOGETHER WITH THOSE OF THE PROTEIN IN THE COMPLEX.

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	EMBOSS		T. NAKAI, A. KIDERA, H. NAKAMURA
2	refinement	PRESTO		MORIKAMI,NAKAI,KIDERA,SAITO,NAKAMURA

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.