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Thioesterase Domain from 6-Deoxyerythronolide Synthase (DEBS TE), pH 8.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KEZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 PEG 400, bicine, magnesium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP at 277K
Crystal Properties Matthews coefficient Solvent content 6 79.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.5 α = 90 b = 102.5 β = 90 c = 156.5 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 190 CCD ADSC QUANTUM 4 1999-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 99.5 0.103 9.7 13.2 26440 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.05 100 0.51 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1KEZ 3 30 26614 22595 1223 89.6 0.2595 0.24447 0.24215 0.2535 0.28663 0.2987 RANDOM 18.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.4 -1.03 -3.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.597 r_scangle_it 6.983 r_scbond_it 4.183 r_angle_refined_deg 3.562 r_mcangle_it 2.47 r_mcbond_it 1.318 r_symmetry_vdw_refined 0.748 r_symmetry_hbond_refined 0.57 r_nbd_refined 0.336 r_xyhbond_nbd_refined 0.241
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.597 r_scangle_it 6.983 r_scbond_it 4.183 r_angle_refined_deg 3.562 r_mcangle_it 2.47 r_mcbond_it 1.318 r_symmetry_vdw_refined 0.748 r_symmetry_hbond_refined 0.57 r_nbd_refined 0.336 r_xyhbond_nbd_refined 0.241 r_chiral_restr 0.24 r_bond_refined_d 0.043 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3776 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing