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1.22 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MH5 PDB ENTRY 1MH5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 290 Sodium acetate, NaCl, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.61 52.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.046 α = 90 b = 65.349 β = 90 c = 138.563 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2000-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 0.870 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 10 93.4 0.035 32 8.3 141368 141368 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.22 1.24 63.3 0.219 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT PDB ENTRY 1MH5 1.22 10 141368 141368 7075 93.4 0.12437 0.12284 0.1272 0.15391 0.1265 RANDOM 13.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.56 -0.35
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 24.095 r_dihedral_angle_1_deg 17.245 r_dihedral_angle_2_deg 17.231 r_sphericity_bonded 11.152 r_scangle_it 10.982 r_scbond_it 8.663 r_mcangle_it 5.374 r_mcbond_it 3.812 r_angle_other_deg 3.001 r_rigid_bond_restr 2.365
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 24.095 r_dihedral_angle_1_deg 17.245 r_dihedral_angle_2_deg 17.231 r_sphericity_bonded 11.152 r_scangle_it 10.982 r_scbond_it 8.663 r_mcangle_it 5.374 r_mcbond_it 3.812 r_angle_other_deg 3.001 r_rigid_bond_restr 2.365 r_angle_refined_deg 1.749 r_nbd_refined 0.381 r_symmetry_vdw_refined 0.367 r_symmetry_hbond_refined 0.351 r_xyhbond_nbd_refined 0.309 r_symmetry_vdw_other 0.288 r_xyhbond_nbd_other 0.286 r_nbtor_other 0.209 r_nbd_other 0.201 r_chiral_restr 0.14 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3314 Nucleic Acid Atoms Solvent Atoms 935 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing