1LZL

Bacterial Heroin Esterase


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1LZKPDB ENTRY 1LZK

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION6.4295AMMONIUM SULFATE, SODIUM CHLORIDE, BES, pH 6.4, EVAPORATION, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.2745.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.431α = 90
b = 71.431β = 90
c = 105.675γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95.5CCDADSC QUANTUM 42002-03-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.94641SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.326.799.70.04235.247698476984
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.31.3299.50.5852.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1LZK1.326.76878876984370099.70.1530.213RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
6
RMS Deviations
KeyRefinement Restraint Deviation
s_approx_iso_adps0.072
s_non_zero_chiral_vol0.069
s_zero_chiral_vol0.063
s_similar_adp_cmpnt0.049
s_angle_d0.029
s_from_restr_planes0.0274
s_anti_bump_dis_restr0.019
s_bond_d0.011
s_rigid_bond_adp_cmpnt0.006
s_similar_dist
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2386
Nucleic Acid Atoms
Solvent Atoms313
Heterogen Atoms

Software

Software
Software NamePurpose
SHELXL-97refinement
HKL-2000data reduction
CNSrefinement
HKL-2000data collection
HKL-2000data scaling
CNSphasing