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Monoclinic hen egg white lysozyme, thiocyanate complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LYM MONOMER A FROM 5LYM PDB ENTRY (MONOCLINIC LYSOZYME)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 KSCN 190MM BUFFER CH3COOK 50MM, PH=5, pH 5.0
Crystal Properties Matthews coefficient Solvent content 1.9 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.01 α = 90 b = 63.18 β = 90 c = 60.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 283 IMAGE PLATE MAR scanner 345 mm plate MIRROR 1998-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 15.83 96.8 0.028 15.2 4.2 25539 1 18.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.63 1.69 89.5 0.121 6.3 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R MONOMER A FROM 5LYM PDB ENTRY (MONOCLINIC LYSOZYME) 1.63 15.83 2 25515 2526 96.9 0.198 0.198 0.1973 0.237 RANDOM 16.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 22.2 x_scangle_it 4.25 x_scbond_it 2.8 x_mcangle_it 2.51 x_mcbond_it 1.58 x_angle_deg 1.4 x_improper_angle_d 1.07 x_bond_d 0.006 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 22.2 x_scangle_it 4.25 x_scbond_it 2.8 x_mcangle_it 2.51 x_mcbond_it 1.58 x_angle_deg 1.4 x_improper_angle_d 1.07 x_bond_d 0.006 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2002 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 9
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing X-PLOR refinement CCP4 data scaling