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ENGINEERED LIPOCALIN DIGA16 : APO-FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other The structure of diga16 in presence of digoxigenin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 298 0.1-M Hepes, 10% Isopropanole, 19% PEG 4000, pH = 7.8, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.873 α = 90 b = 63.476 β = 92.02 c = 38.191 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate 2001-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.22 89.1 0.04 14.2 2.3 14754 14754 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 77.2 0.2 2.3 1.2 1260
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT The structure of diga16 in presence of
digoxigenin 1.8 48.22 14674 14674 726 89.45 0.21229 0.209 0.215 0.289 0.2957 RANDOM 28.316
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.1 -2.68 2.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.968 r_scangle_it 8.467 r_mcangle_it 7.394 r_dihedral_angle_1_deg 6.865 r_scbond_it 6.409 r_mcbond_it 5.672 r_angle_refined_deg 2.684 r_angle_other_deg 1.316 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.968 r_scangle_it 8.467 r_mcangle_it 7.394 r_dihedral_angle_1_deg 6.865 r_scbond_it 6.409 r_mcbond_it 5.672 r_angle_refined_deg 2.684 r_angle_other_deg 1.316 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.249 r_symmetry_vdw_other 0.245 r_nbd_other 0.205 r_xyhbond_nbd_refined 0.196 r_symmetry_hbond_refined 0.187 r_chiral_restr 0.162 r_bond_refined_d 0.018 r_gen_planes_refined 0.015 r_gen_planes_other 0.01 r_bond_other_d 0.001 r_nbtor_other r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1320 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing