Solution Structure of the Cdc13 DNA-binding Domain in a Complex with Single-Stranded Telomeric DNA (DNA structure not modeled)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 90% H2O/10% D2O | 7.0 | ambient | 303 | |||
| 2 | 3D_13C-separated_NOESY | 100% D2O | 7.0 | ambient | 303 | |||
| 3 | 4D_13C/15N-separated_NOESY | 90% H2O/10% D2O | 7.0 | ambient | 303 | |||
| 4 | 4D_13C-separated_NOESY | 100% D2O | 7.0 | ambient | 308 | |||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 500 |
| 3 | Bruker | DRX | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry, simulated annealing, molecular dynamics | DNA STRUCTURE NOT MODELED DUE TO CHEMICAL SHIFT ASSIGNMENT AMBIGUITY. | NMRPipe |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations, structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 10 (closest to the average) |
| Additional NMR Experimental Information | |
|---|---|
| Details | Representative conformer was structure closest to the mean. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio | |
| 2 | data analysis | ANSIG | 3.3 | Kraulis |
| 3 | structure solution | X-PLOR | 3.851 | Brunger |
| 4 | refinement | X-PLOR | 3.851 | Brunger |
