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CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FAZ PDB ENTRY 1FAZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 297 MPD, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.02 47.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.28 α = 90 b = 54.25 β = 90.2 c = 30.65 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 292 IMAGE PLATE RIGAKU RAXIS IIC mirrors 1999-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 100 73.2 0.065 11.2 2.37 14730 12820 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.7 48 0.283 2.41 1325
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PDB ENTRY 1FAZ 1.6 5 12244 12244 76.3 0.1496 0.1496
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1047
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.048 s_zero_chiral_vol 0.045 s_similar_adp_cmpnt 0.041 s_angle_d 0.023 s_from_restr_planes 0.0208 s_bond_d 0.008 s_anti_bump_dis_restr 0.007 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 958 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 1
Software Software Software Name Purpose X-PLOR model building SHELXL-97 refinement X-PLOR phasing