1K7X

CRYSTAL STRUCTURE OF THE BETA-SER178PRO MUTANT OF TRYPTOPHAN SYNTHASE


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1QOPPDB ENTRY 1QOP

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.8pH 7.80
Crystal Properties
Matthews coefficientSolvent content
2.652.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 184.006α = 90
b = 59.986β = 94.65
c = 67.537γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2000-11-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.73196.80.1039.642.99178258-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.895.90.3662.87

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1QOP1.72074247397296.80.189440.186850.2385RANDOM21.839
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.05-0.281.69-0.68
RMS Deviations
KeyRefinement Restraint Deviation
p_scangle_it9.294
p_scbond_it6.381
p_mcangle_it4.224
p_mcbond_it3.111
p_chiral_restr0.387
p_xyhbond_nbd0.144
p_hb_or_metal_coord0.1
p_bond_d0.059
p_plane_restr0.012
p_angle_d
RMS Deviations
KeyRefinement Restraint Deviation
p_scangle_it9.294
p_scbond_it6.381
p_mcangle_it4.224
p_mcbond_it3.111
p_chiral_restr0.387
p_xyhbond_nbd0.144
p_hb_or_metal_coord0.1
p_bond_d0.059
p_plane_restr0.012
p_angle_d
p_angle_deg
p_planar_d
p_singtor_nbd
p_multtor_nbd
p_xhyhbond_nbd
p_planar_tor
p_staggered_tor
p_orthonormal_tor
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4870
Nucleic Acid Atoms
Solvent Atoms434
Heterogen Atoms16

Software

Software
Software NamePurpose
CNSrefinement
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
CNSphasing