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10 Structure Ensemble of the 14-residue peptide RG-KWTY-NG-ITYE-GR (MBH12)
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D ROESY
1 mM Peptide MBH12
90% H2O/10% D2O
0
5.0
ambient
283
2
2D NOESY
1 mM Peptide MBH12
100% D2O
0
5.0
ambient
283
3
2D NOESY
1 mM Peptide MBH12
40% CD3OD, 60% H2O
0
5.0
ambient
283
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DRX
500
NMR Refinement
Method
Details
Software
simulated annealing combined with torsion angle dynamics (DYANA)
The structures are based on a total of 70 restraints, 60 are NOE-derived distance constraints and 10 dihedral angle restraints. The pairwise RMSD for residues 3-12 was 0.38 +/- 0.21 A for the backbone and 1.36 +/- 0.35 A for all heavy atoms. The estimated beta-hairpin population of this peptide is 66 +/- 4%. The first and last two residues (RG) are disordered, because they were added just to avoid aggregation. The side chains of Trp4, Tyr6, Ile9 and Tyr11 are interacting in one side of the beta hairpin, forming a hydrophobic cluster. Asn7 at position L1 of the beta-turn is directed outwards from the beta-hairpin, as expected for a type I' beta-turn.