1K3G
NMR Solution Structure of Oxidized Cytochrome c-553 from Bacillus pasteurii
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1-3 mM oxidized cytochrome c-553 in 10 mM phosphate buffer | 90%H2O+10%D2O; 100% D2O | 10 mM phosphate buffer | 7.5 | Ambient | 288 | |
2 | HNHA | 1-3 mM oxidized cytochrome c-553 in 10 mM phosphate buffer | 90%H2O+10%D2O; 100% D2O | 10 mM phosphate buffer | 7.5 | Ambient | 288 | |
3 | 1D NOE | 1-3 mM oxidized cytochrome c-553 in 10 mM phosphate buffer | 90%H2O+10%D2O; 100% D2O | 10 mM phosphate buffer | 7.5 | Ambient | 288 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, restrained energy minimization | PSEUDOCONTACT SHIFTS WERE INCLUDED AS CONSTRAINTS BY MEANS OF MODIFIED DYANA AND SANDER MODULES (PSEUDODYANA, PSEUDOREM) (BANCI ET AL., 1997) | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 30 |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | XwinNMR | 2.6 | Bruker |
2 | data analysis | XEASY | 1.3.13 | Xia |
3 | structure solution | DYANA | 1.5 | Guentert |
4 | refinement | Amber | 5.0 | Kollman |