1JLP
Solution Structure of the Noncompetitive Skeletal Muscle Nicotinic Acetylcholine Receptor Antagonist Psi-conotoxin PIIIF
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 12 mM psi-conotoxin PIIIF; TFA added to pH 3.5 | 90% H2O/10% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 277 | |
2 | DQF-COSY | 12 mM psi-conotoxin PIIIF; TFA added to pH 3.5 | 90% H2O/10% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 277 | |
3 | PE-COSY | 12 mM psi-conotoxin PIIIF | 100% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 295 | |
4 | 13C-selected 2D NOESY | 14 mM of psi-conotoxin PIIIF [5,10,16,21,22] 3-13C-Cys; TFA added to pH 3.5 | 90% H2O/10% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 277 | |
5 | 13C-selected 2D NOESY | 16 mM of psi-conotoxin PIIIF [4] 3-13C-Cys; TFA added to pH 3.5 | 90% H2O/10% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 277 | |
6 | Double half-filtered 2D NOESY | 16 mM of psi-conotoxin PIIIF [4] 3-13C-Cys; TFA added to pH 3.5 | 90% H2O/10% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 277 | |
7 | Double half-filtered 2D PE-COSY | 16 mM of psi-conotoxin PIIIF [4] 3-13C-Cys; TFA added to pH 3.5 | 90% H2O/10% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 295 | |
8 | 13C-selected 1D 1H NMR | 16 mM of psi-conotoxin PIIIF [4] 3-13C-Cys; TFA added to pH 3.5 | 90% H2O/10% D2O | 12 mM; tetra-TFA salt | 3.5 | ambient | 295 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry molecular dynamics relaxation matrix distance geometry simulated annealing | These structures are based on 380 NOE-derived distance restraints, 7 restraints on phi derived from J-coupling, and 7 restraints on chi1 determined from J-coupling and NOE volumes. | VNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum, structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 17 |
Representative Model | 12 (closest to the average) |
Additional NMR Experimental Information | |
---|---|
Details | This structure was determined using isotopic filtration and isotope-selected 1H observation in addition to standard homonuclear techniques. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1B | Varian, Inc. |
2 | processing | Felix | 97.0 | MSI, Inc. |
3 | iterative matrix relaxation | IRMA | 97.0 | MSI, Inc. |
4 | structure solution | DGII | 97.0 | MSI, Inc. |
5 | structure solution | Discover | 2.98 | MSI, Inc. |
6 | refinement | Discover | 2.98 | MSI, Inc. |