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Crystal structure of indole-3-glycerol phosphate synthase (TM0140) from Thermotoga maritima at 3.0 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 293 50% PEG 200, 0.1M phosphate-Citrate ph 4.2, 0.2M NaCl, pH 5.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K, pH 5.20
Crystal Properties Matthews coefficient Solvent content 2.72 54.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.5966 α = 90 b = 117.5966 β = 90 c = 82.1529 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 FLAT MIRROR 2001-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 44.293 99.9 0.068 21 6.7 6026 57.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.08 100 0.332 6.3 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 44.29 6027 6019 339 99.9 0.24 0.24 0.252 0.297 0.3056 RANDOM 58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.162 -3.382 4.544
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.396 c_mcangle_it 3.028 c_scbond_it 1.999 c_mcbond_it 1.684 c_angle_deg 1.48 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.396 c_mcangle_it 3.028 c_scbond_it 1.999 c_mcbond_it 1.684 c_angle_deg 1.48 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1859 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 2
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling CCP4 data reduction MOLREP phasing CCP4 model building CNS refinement CCP4 data scaling CCP4 phasing