☰ Navigation Tabs
Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.1 293 0.1M Sodium acetate, 45% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 4.10
Crystal Properties Matthews coefficient Solvent content 2.17 43.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.037 α = 90 b = 89.021 β = 96.15 c = 77.871 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-02-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 0.9789, 0.9791, 0.9798 Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 99.6 0.095 0.073 6.8 4.5 133189 3 26.32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 99.6 0.437 0.331 1.6 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 10 132614 132614 13282 99.4 0.166 0.166 0.194 RANDOM 15.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.109 -0.263 -1.451 1.56
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.84 c_scangle_it 3.571 c_scbond_it 2.559 c_mcangle_it 1.912 c_angle_deg 1.76 c_mcbond_it 1.436 c_improper_angle_d 1.17 c_bond_d 0.015 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.84 c_scangle_it 3.571 c_scbond_it 2.559 c_mcangle_it 1.912 c_angle_deg 1.76 c_mcbond_it 1.436 c_improper_angle_d 1.17 c_bond_d 0.015 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8412 Nucleic Acid Atoms Solvent Atoms 642 Heterogen Atoms 16
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing CNS refinement CCP4 data scaling