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PHOSPHATE INHIBITED BACILLUS PASTEURII UREASE CRYSTAL STRUCTURE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UBP PDB ENTRY 2ubp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 293 1.8 M AMS, 100 mM Sodium Phosphate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.99 58.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.489 α = 90 b = 131.489 β = 90 c = 189.489 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH BENT MIRROR 1998-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.834 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 11.987 99.3 0.097 0.097 10.2 4.58 82718 379334 2 2 22.08
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 94.3 0.448 0.448 1.85 3.14 3824
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2ubp 1.85 11.99 2 2 80351 80351 1607 99.3 0.19 0.17 0.1683 0.21 RANDOM 30.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 14.5 p_planar_tor 5.1 p_scangle_it 5.03 p_scbond_it 3.943 p_mcangle_it 2.374 p_mcbond_it 1.891 p_planar_d 0.44 p_angle_d 0.033 p_bond_d 0.012
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.1 p_staggered_tor 14.5 p_planar_tor 5.1 p_scangle_it 5.03 p_scbond_it 3.943 p_mcangle_it 2.374 p_mcbond_it 1.891 p_planar_d 0.44 p_angle_d 0.033 p_bond_d 0.012 p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6054 Nucleic Acid Atoms Solvent Atoms 896 Heterogen Atoms 7
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling