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Cofilin homology domain of a yeast actin-binding protein ABP1P
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1COF PDB ENTRY 1COF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 290 PEG 4000, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP at 290K
Crystal Properties Matthews coefficient Solvent content 2.22 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.48 α = 90 b = 66.68 β = 108.26 c = 125.1 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 140 IMAGE PLATE MARRESEARCH 1997-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 1.04019 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 15 96.1 0.069 9.9 2.1 68718 29.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.23 89.6 0.397 1.4 9605
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIR, PHASED TRANSLATION FUNCTION, MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1COF 2.1 15 2 67961 6875 94.9 0.215 0.213 0.2154 0.259 0.2607 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.7 c_scangle_it 3.15 c_mcangle_it 2.48 c_scbond_it 2.11 c_mcbond_it 1.51 c_angle_deg 1.2 c_improper_angle_d 0.79 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9669 Nucleic Acid Atoms Solvent Atoms 521 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM model building X-PLOR model building CNS refinement DM phasing X-PLOR phasing CNS phasing