1H8E

(ADP.AlF4)2(ADP.SO4) bovine F1-ATPase (all three catalytic sites occupied)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BMFPDB CODE 1BMF, NATIVE BOVINE MITOCHONDRIAL F1- ATPASE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18CRYSTALS WERE GROWN IN THE PRESENCE OF AZIDE, A KNOWN INHIBITOR, BUT THIS HAS NOT BEEN LOCATED IN THE STRUCTURE., pH 8.00
Crystal Properties
Matthews coefficientSolvent content
2.6454

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 267.7α = 90
b = 106.2β = 90
c = 138.3γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD1998-08-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1213.579.60.0669.12.120995326.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1440.60.481.71.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB CODE 1BMF, NATIVE BOVINE MITOCHONDRIAL F1- ATPASE213.5200363959079.60.2010.264RANDOM45
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor28.9
p_staggered_tor16.2
p_scangle_it5.94
p_scbond_it4.71
p_planar_tor3.8
p_mcangle_it2.75
p_mcbond_it1.96
p_multtor_nbd0.209
p_xyhbond_nbd0.192
p_singtor_nbd0.187
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor28.9
p_staggered_tor16.2
p_scangle_it5.94
p_scbond_it4.71
p_planar_tor3.8
p_mcangle_it2.75
p_mcbond_it1.96
p_multtor_nbd0.209
p_xyhbond_nbd0.192
p_singtor_nbd0.187
p_chiral_restr0.124
p_hb_or_metal_coord0.045
p_planar_d0.037
p_angle_d0.025
p_plane_restr0.023
p_bond_d0.012
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms24429
Nucleic Acid Atoms
Solvent Atoms1693
Heterogen Atoms207

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing