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Apolipoprotein E3 22kD fragment LYS146GLN mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BZ4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 50MM NA-CACODYLATE, PH 5.6, 20-25% PEG 400, 1% 2-ME. RT. ORTHORHOMBIC FORM ORTHO-2 APPEARS (SEE PDB ENTRY 1OR2).
Crystal Properties Matthews coefficient Solvent content 2.19 43.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.7 α = 90 b = 52.96 β = 90 c = 84.42 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 ADSC ADSC MULTIWIRE COLLIMATOR 0.5 MM 1995-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98 0.0413 22.4 3.3 14706
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 96.6 0.247 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BZ4 1.9 20 13960 737 98.3 0.205 0.203 0.2236 0.259 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.722 r_scbond_it 4.73 r_mcangle_it 4.078 r_mcbond_it 2.71 r_angle_other_deg 2.679 r_xyhbond_nbd_refined 0.298 r_nbd_refined 0.293 r_chiral_restr 0.174 r_symmetry_hbond_refined 0.155 r_symmetry_vdw_refined 0.115
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.722 r_scbond_it 4.73 r_mcangle_it 4.078 r_mcbond_it 2.71 r_angle_other_deg 2.679 r_xyhbond_nbd_refined 0.298 r_nbd_refined 0.293 r_chiral_restr 0.174 r_symmetry_hbond_refined 0.155 r_symmetry_vdw_refined 0.115 r_bond_refined_d 0.037 r_gen_planes_refined 0.016 r_bond_other_d r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1150 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data reduction ADSC data scaling EPMR phasing