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Malic Enzyme from Pigeon Liver
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB PDB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 100 MM SODIUM CITRATE, PH 5.5, 8% PEG6000, 1M LICL
Crystal Properties Matthews coefficient Solvent content 2.94 57.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.149 α = 90.05 b = 140.863 β = 87.16 c = 167.079 γ = 75.63
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 ADSC Q-4 2001-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 88.2 0.082 10.6 2 334606 2 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 76 0.214 3.6 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB 2.5 10 2 309710 23235 83 0.21 0.21 0.256 RANDOM 20.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 14.02 -5.44 -0.31 -6.03 -0.39 -7.99
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.9 c_scangle_it 2.49 c_scbond_it 1.72 c_mcangle_it 1.55 c_angle_deg 1.3 c_mcbond_it 0.95 c_improper_angle_d 0.83 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.9 c_scangle_it 2.49 c_scbond_it 1.72 c_mcangle_it 1.55 c_angle_deg 1.3 c_mcbond_it 0.95 c_improper_angle_d 0.83 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 69521 Nucleic Acid Atoms Solvent Atoms 1049 Heterogen Atoms 949
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling COMO phasing