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The metzincin's methionine: PrtC M226C-E189K double mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other PRTC WILDTYPE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PH 6.5, NACL
Crystal Properties Matthews coefficient Solvent content 3.6 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.7 α = 90 b = 102.7 β = 90 c = 121.27 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MSC YALE MIRRORS 2000-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 100 0.098 12.5 6.1 43655
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 0.553 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PRTC WILDTYPE 2.1 39.22 40169 3486 100 0.172 0.204 RANDOM 27.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.21 0.41 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.28 r_dihedral_angle_1_deg 6.03 r_scangle_it 4.271 r_scbond_it 2.918 r_mcangle_it 2.524 r_angle_refined_deg 1.759 r_mcbond_it 1.748 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.187 r_symmetry_vdw_refined 0.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.28 r_dihedral_angle_1_deg 6.03 r_scangle_it 4.271 r_scbond_it 2.918 r_mcangle_it 2.524 r_angle_refined_deg 1.759 r_mcbond_it 1.748 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.187 r_symmetry_vdw_refined 0.144 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.139 r_metal_ion_refined 0.125 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3518 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing