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GABA(A) receptor associated protein GABARAP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EO6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 18MG/ML GABARAP, 50MM TRIS PH8.5, 0.25M NACL,10%(W/V) PEGMONO, pH 8.50
Crystal Properties Matthews coefficient Solvent content 1.91 69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.013 α = 90 b = 55.124 β = 90 c = 64.418 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 22 97.6 0.065 5.3 7.6 11007
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 95.1 0.247 2.2 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1EO6 1.75 41.89 10450 533 97.1 0.203 0.201 0.2059 0.23 0.2272 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.405 r_scbond_it 3.374 r_mcangle_it 2.204 r_angle_other_deg 2.107 r_mcbond_it 1.264 r_dihedral_angle_3_deg 0.956 r_xyhbond_nbd_other 0.345 r_symmetry_hbond_other 0.339 r_xyhbond_nbd_refined 0.292 r_symmetry_hbond_refined 0.27
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.405 r_scbond_it 3.374 r_mcangle_it 2.204 r_angle_other_deg 2.107 r_mcbond_it 1.264 r_dihedral_angle_3_deg 0.956 r_xyhbond_nbd_other 0.345 r_symmetry_hbond_other 0.339 r_xyhbond_nbd_refined 0.292 r_symmetry_hbond_refined 0.27 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.234 r_nbd_other 0.221 r_metal_ion_refined 0.17 r_symmetry_vdw_other 0.159 r_chiral_restr 0.149 r_nbtor_other 0.083 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 987 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing