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MURINE ALLOREACTIVE SCFV TCR-PEPTIDE-MHC CLASS I MOLECULE COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KB5 PDB ENTRIES 1KB5, 1VAC experimental model PDB 1VAC PDB ENTRIES 1KB5, 1VAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 PEG 6000 10% HEPES 0.1M PH 7.0
MGAC 0.25 M NACL 0.25M, pH 7.00, VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 3.2 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.58 α = 90 b = 120.42 β = 90 c = 102.85 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 1999-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 23.1 99.9 0.081 8.3 7.2 33614 49.87
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.375 1.9 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1KB5, 1VAC 2.5 12 32832 3300 100 0.218 0.225 0.2163 0.276 0.2363 RANDOM 57.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.2 p_staggered_tor 19.6 p_scangle_it 4.516 p_mcangle_it 3.46 p_scbond_it 2.857 p_planar_tor 2.2 p_mcbond_it 1.866 p_multtor_nbd 0.252 p_singtor_nbd 0.204 p_chiral_restr 0.172
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.2 p_staggered_tor 19.6 p_scangle_it 4.516 p_mcangle_it 3.46 p_scbond_it 2.857 p_planar_tor 2.2 p_mcbond_it 1.866 p_multtor_nbd 0.252 p_singtor_nbd 0.204 p_chiral_restr 0.172 p_planar_d 0.037 p_angle_d 0.03 p_plane_restr 0.013 p_bond_d 0.011 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4948 Nucleic Acid Atoms Solvent Atoms 191 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling