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Crystal structure of the human acyl protein thioesterase 1 at 1.5 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 28 - 32% OF SATURATED AMMONIUM SULFATE, 0.1 M SODIUM ACETATE, DI-THIO-THREITOL, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.75 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.59 α = 90 b = 127.89 β = 102.8 c = 39.66 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 2000-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 30 80 0.052 17 2.2 163216 50736 1 1 15.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.53 27 0.32 2.5 1.6
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION 1.5 20 1 50223 1293 80 0.183 0.1792 0.237 0.2292 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.3 p_staggered_tor 14.7 p_planar_tor 7 p_scangle_it 3.1 p_mcangle_it 2.1 p_scbond_it 2.1 p_mcbond_it 1.4 p_multtor_nbd 0.26 p_singtor_nbd 0.18 p_xyhbond_nbd 0.12
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 23.3 p_staggered_tor 14.7 p_planar_tor 7 p_scangle_it 3.1 p_mcangle_it 2.1 p_scbond_it 2.1 p_mcbond_it 1.4 p_multtor_nbd 0.26 p_singtor_nbd 0.18 p_xyhbond_nbd 0.12 p_chiral_restr 0.089 p_planar_d 0.038 p_angle_d 0.031 p_bond_d 0.019 p_plane_restr 0.013 p_hb_or_metal_coord p_xhyhbond_nbd p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3454 Nucleic Acid Atoms Solvent Atoms 465 Heterogen Atoms 40
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SnB phasing SHARP phasing DM model building WARP model building REFMAC refinement DM phasing