1FHO
Solution Structure of the PH Domain from the C. Elegans Muscle Protein UNC-89
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_13C-separated_NOESY | 800 uM UNC-89 PH domain 13C,15N; 5mM sodium phosphate | 95% H2O/ 5% D2O; 15% dDMSO added to sample | 5mM | 6.8 | ambient | 303 | |
| 2 | 3D_15N-separated_NOESY | 800 uM UNC-89 PH domain 13C,15N; 5mM sodium phosphate | 95% H2O/ 5% D2O; 15% dDMSO added to sample | 5mM | 6.8 | ambient | 303 | |
| 3 | HNHA | 800 uM UNC-89 PH domain 13C,15N; 5mM sodium phosphate | 95% H2O/ 5% D2O; 15% dDMSO added to sample | 5mM | 6.8 | ambient | 303 | |
| 4 | 15N_HSQC_not_decoupled | 800 uM UNC-89 PH domain 15N; 5mM sodium phosphate | 95% H2O/ 5% D2O; DMPC/DLPC/SDS (ratio 3.2:1:0.1; 5% w/v total lipid) | 5mM | 6.8 | ambient | 303 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DMX | 600 |
| 2 | Bruker | DMX | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| Automated NOE assignment,Torsion angle dynamics, Cartesian simulated annealing. | The structure was calculated automated NOE assignment and structure calculation using ARIA/CNS. Manual NOE assignments were added between cycles of automated assignment. The final structures were refined in a shell of explicit solvent. Data consisted of: 1230 unique NOE restaints; 44 phi restraints (3JHNHA scalar couplings, direct refinement against couplings); 41 1JHN residual dipolar couplings. Final ensemble was refined in explicit water. | XwinNMR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 25 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | Structure determined using triple resonance NMR techniques. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | XwinNMR | 2 | Bruker |
| 2 | processing | NMRPipe | 1.7 | Delaglio et al |
| 3 | data analysis | XEASY | 1.3.13 | Xia et al |
| 4 | structure solution | ARIA | 0.5 | Nilges |
| 5 | structure solution | CNS | 0.5 | Brunger et al |
| 6 | refinement | CNS | 0.5 | Brunger et al |
