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ISOTYPE SELECTIVITY OF THE HUMAN RETINOIC ACID NUCLEAR RECEPTOR HRAR: THE COMPLEX WITH THE RARBETA/GAMMA-SELECTIVE RETINOID CD564
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EXA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 290 sodium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.25 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.849 α = 90 b = 59.849 β = 90 c = 155.158 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 18 92.6 0.031 40.7 3.55 64898 64898 19.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.32 88.7 0.413 3 3.4 3026
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R 1EXA 1.3 6 64056 60821 3235 92.5 0.134 0.1329 0.1329 0.1905 0.1641 0.1997 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 23 1940 2191.7
RMS Deviations Key Refinement Restraint Deviation s_torsion_deg 26.7 s_torsion_impr_deg 1.65 s_approx_iso_adps 0.09 s_non_zero_chiral_vol 0.083 s_zero_chiral_vol 0.072 s_similar_adp_cmpnt 0.038 s_angle_d 0.031 s_from_restr_planes 0.0249 s_anti_bump_dis_restr 0.022 s_bond_d 0.014
RMS Deviations Key Refinement Restraint Deviation s_torsion_deg 26.7 s_torsion_impr_deg 1.65 s_approx_iso_adps 0.09 s_non_zero_chiral_vol 0.083 s_zero_chiral_vol 0.072 s_similar_adp_cmpnt 0.038 s_angle_d 0.031 s_from_restr_planes 0.0249 s_anti_bump_dis_restr 0.022 s_bond_d 0.014 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1942 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 64
Software Software Software Name Purpose SHELXL-97 refinement CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing