☰ Navigation Tabs
STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1mM tau exon 10 SRE RNA U-13C,15N; 10mM phosphate buffer, pH 6; 1mM neomycin unlabelled 90% H2O/10% D2O 10mM potassium phosphate 6 1 atm 300 2 3D_13C-separated_NOESY 1mM tau exon 10 SRE RNA U-13C,15N; 10mM phosphate buffer, pH 6; 1mM neomycin unlabelled 90% H2O/10% D2O 10mM potassium phosphate 6 1 atm 300 3 2D TOCSY 1mM tau exon 10 SRE RNA U-13C,15N; 10mM phosphate buffer, pH 6; 1mM neomycin unlabelled 90% H2O/10% D2O 10mM potassium phosphate 6 1 atm 300 4 2D 13C HSQC 1mM tau exon 10 SRE RNA U-13C,15N; 10mM phosphate buffer, pH 6; 1mM neomycin unlabelled 90% H2O/10% D2O 10mM potassium phosphate 6 1 atm 300 5 2D 15N HSQC 1mM tau exon 10 SRE RNA U-13C,15N; 10mM phosphate buffer, pH 6; 1mM neomycin unlabelled 90% H2O/10% D2O 10mM potassium phosphate 6 1 atm 300 6 HCCP, HETEROTOCSY 1mM tau exon 10 SRE RNA U-13C,15N; 10mM phosphate buffer, pH 6; 1mM neomycin unlabelled 90% H2O/10% D2O 10mM potassium phosphate 6 1 atm 300
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DMX 600
NMR Refinement Method Details Software restrained molecular dynamics The structure was calculated starting from random coordinates. No manual or automatic docking step was used at any stage of the calculation. X-PLOR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations, structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 17
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR 3.8 Brunger 2 data analysis Felix 97.0 msi 3 collection XwinNMR 2.0 bruker 4 refinement X-PLOR 3.8 Brunger