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Methyl-coenzyme M reductase from Methanosarcina barkeri
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MRO PDB ENTRY 1MRO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.47 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.678 α = 90 b = 153.099 β = 90 c = 153.288 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 93.5 0.059 16.2 2.7 326507 -3 13.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.62 92.3 0.259 5.3 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MRO 1.6 30 311702 15708 89 0.16 0.16 0.1668 0.179 RANDOM 14.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.97 -7.04 3.07
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.5 c_improper_angle_d 3.06 c_scangle_it 1.46 c_scbond_it 0.97 c_angle_deg 0.9 c_mcangle_it 0.85 c_mcbond_it 0.54 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.5 c_improper_angle_d 3.06 c_scangle_it 1.46 c_scbond_it 0.97 c_angle_deg 0.9 c_mcangle_it 0.85 c_mcbond_it 0.54 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18915 Nucleic Acid Atoms Solvent Atoms 2195 Heterogen Atoms 198
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing