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METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CL1 PDB ENTRY 1CL1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 3.2M AMMONIUM SULPHATE, 0.2M LISO4, 0.1M CITRATE PH5.6, pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.85 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.258 α = 90 b = 88.258 β = 90 c = 217.849 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.5 SRS PX9.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 28.9 98.6 0.067 12.5 2.5 49696 29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.26 97.2 0.365 2.2 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CL1 2.18 25 44982 2368 98.6 0.162 0.212 RANDOM 31.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.9 p_staggered_tor 15.7 p_special_tor 15 p_planar_tor 4.9 p_scangle_it 3.132 p_mcangle_it 2.303 p_scbond_it 2.231 p_mcbond_it 1.663 p_multtor_nbd 0.26 p_singtor_nbd 0.187
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.9 p_staggered_tor 15.7 p_special_tor 15 p_planar_tor 4.9 p_scangle_it 3.132 p_mcangle_it 2.303 p_scbond_it 2.231 p_mcbond_it 1.663 p_multtor_nbd 0.26 p_singtor_nbd 0.187 p_xyhbond_nbd 0.154 p_chiral_restr 0.141 p_planar_d 0.046 p_angle_d 0.041 p_plane_restr 0.0248 p_bond_d 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5909 Nucleic Acid Atoms Solvent Atoms 645 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing