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Xylanase 10A from Sreptomyces lividans. native structure at 1.2 angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 PROTEIN 60MG/ML WAS CRYSTALLISED WITH 5% PEG 4000, 100MM SODIUM ACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.2 44.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.25 α = 90 b = 46.93 β = 90 c = 86.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 297 1997-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 15 96 0.051 23.6 4.3 84936 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 91 0.35 3.4 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.2 15 81581 4292 96 0.098 0.1106 0.124 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.3 p_staggered_tor 11.9 p_scangle_it 5.741 p_planar_tor 5.2 p_scbond_it 4.499 p_mcangle_it 3.27 p_mcbond_it 2.452 p_multtor_nbd 0.24 p_singtor_nbd 0.15 p_xyhbond_nbd 0.13
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.3 p_staggered_tor 11.9 p_scangle_it 5.741 p_planar_tor 5.2 p_scbond_it 4.499 p_mcangle_it 3.27 p_mcbond_it 2.452 p_multtor_nbd 0.24 p_singtor_nbd 0.15 p_xyhbond_nbd 0.13 p_chiral_restr 0.098 p_planar_d 0.031 p_plane_restr 0.028 p_angle_d 0.025 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2333 Nucleic Acid Atoms Solvent Atoms 438 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling