X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1AZX 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
175MG/ML 1:1 MIX OF INHIBITORY: LATENT ANTITHROMBIN-III 16% PEG 4000, 63 MM NACACODYLATE PH 7.0, 0.05% AZIDE
Crystal Properties
Matthews coefficientSolvent content
2.8356

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.511α = 90
b = 87.071β = 108.88
c = 97.349γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.93094.20.1245.22.523386

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1AZX2.920118094.20.1990.25244
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor23.2
p_transverse_tor22.8
p_scangle_it6.495
p_mcangle_it4.641
p_scbond_it4.306
p_mcbond_it2.638
p_planar_tor2.5
p_chiral_restr0.265
p_multtor_nbd0.214
p_xhyhbond_nbd0.16
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor23.2
p_transverse_tor22.8
p_scangle_it6.495
p_mcangle_it4.641
p_scbond_it4.306
p_mcbond_it2.638
p_planar_tor2.5
p_chiral_restr0.265
p_multtor_nbd0.214
p_xhyhbond_nbd0.16
p_singtor_nbd0.15
p_xyhbond_nbd0.136
p_angle_d0.022
p_bond_d0.009
p_planar_d0.009
p_plane_restr0.004
p_angle_deg
p_hb_or_metal_coord
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6614
Nucleic Acid Atoms
Solvent Atoms14
Heterogen Atoms373

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing