X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1QAGPDB ENTRY 1QAG

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.41.55M AMMONIUM FORMATE, 0.1M HEPES 7.4, pH 7.40
Crystal Properties
Matthews coefficientSolvent content
2.852

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.69α = 61.08
b = 79.33β = 78.22
c = 81.95γ = 70.54
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 5.2RELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.64095.40.05112.71.73628452
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6991.60.252.61.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1QAG2.620344461767950.2320.268RANDOM37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
8.28-0.55-1.07-3.92-0.5-4.32
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.4
p_staggered_tor18
p_scangle_it5.1
p_mcangle_it4.3
p_scbond_it4.1
p_planar_tor3.7
p_mcbond_it2.8
p_multtor_nbd0.27
p_singtor_nbd0.21
p_xyhbond_nbd0.19
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.4
p_staggered_tor18
p_scangle_it5.1
p_mcangle_it4.3
p_scbond_it4.1
p_planar_tor3.7
p_mcbond_it2.8
p_multtor_nbd0.27
p_singtor_nbd0.21
p_xyhbond_nbd0.19
p_chiral_restr0.16
p_planar_d0.053
p_angle_d0.043
p_plane_restr0.017
p_bond_d0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7548
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing